Botanical materials in the wild...and in the aquarium: Influences and Impacts.

As you know, we've spent the better part of the past 6 years talking about every aspect of the botanical-style aquarium that we can think of. We've talked about techniques, approaches, ideas, etc. And we've spent a lot of time sharing information about wild aquatic habitats that we might be interested in replicating in both form and function.

However, I think we haven't spent as much time as we should talking about how botanicals "behave" in wild aquatic habitats.  Much of this stuff has implications for those of us who are interested in replicating these habitats in our aquariums. So, let's dive in a bit more on this topic today!

Among the trees of the flooded forests, after the fruits mature (which occurs at high water levels), seeds will fall into the water and may float on the surface or be submerged for a number of weeks. Ecologists believe that the seed production of the trees coincides with the flood pulses, which facilitates their dispersal by water movement, and by the actions of fish.

Interestingly, scientists postulate that these floating or sinking seeds, which  germinate and establish seedlings after the flood waters recede, do very well, sprouting and establishing themselves quickly, and are not severely affected by waterlogging in most species.

So, within their cycle of life, the trees take advantage of the water as part of their ecological adaptation. Trees in these areas have developed specialized morphologies, such as advantageous roots, butress systems and stilt roots.

 In a lot of wild aquatic habitats where leaf litter and other allochthonous materials accumulate, there are a number of factors which control the density, size, and type of materials which are deposited in streams and such. The flow rate of the water within these habitats determines a lot of things, such as the size of the leaves and other botanical materials  and where in the stream they are deposited. 

I often wonder how much the fallen leaves and seed pods impact the water chemistry in a given stream, pond, or section of an Amazonian flooded forest. I know that studies have been done in which ecologists have measured dissolved oxygen and conductivity, as well as pH. However, those readings only give us so much information.

We hear a lot of discussion about blackwater habitats among hobbyists, and the implications for our aquariums. And part of the game here is understanding what it is that makes this a blackwater river system to begin with. We often hear that blackwater is "low in nutrients." 

What exactly does this mean?

One study concluded that the Rio Negro is a blackwater river in large part because the very low nutrient concentrations of the soils that drain into it have arisen as a result of "several cycles of weathering, erosion, and sedimentation." In other words, there's not a whole lot of minerals and nutrients left in the soils to dissolve into the water to any meaningful extent!

Black-waters, drain from older rocks in areas like the Negro river, result from dissolved fulvic and humic substances, present small amounts of suspended sediment, lower pH (4.0 to 6.0) and dissolved elements. Yes, highly leached tropical environments where most of the soluble elements are quickly removed by heavy rainfall.

Perhaps...another reason (besides the previously cited limitation of light penetration) why aquatic plants are rather scare in these waters? It would appear that the bulk of the nutrients found in these blackwaters are likely dissolved into the aquatic environment by decomposing botanical materials, such as leaves, branches, etc.

Why does that sound familiar?

Besides the color, of course, the defining characteristics of blackwater rivers are pH values in the range of 4-5, low electrical conductivity, and minimal mineral content. Dissolved minerals, such as  Ca, Mg, K, and Na are negligible. And with these low amounts of dissolved minerals come unique challenges for the animals who reside in these systems.

How do fishes survive and thrive in these rather extreme habitats?

It's long been known that fishes are well adapted to their natural habitats, particularly the more extreme ones. And this was borne out in a recent study of the Cardinal Tetra. Lab results suggest that humic substances  protect cardinal tetras in the soft, acidic water in which they resides by preventing excessive sodium loss and stimulating calcium uptake to ensure proper homeostasis.

This is pretty extraordinary, as the humic substances found in the water actually enable the fishes to survive in this highly acidic water which is devoid of much mineral content typically needed for fishes to survive!

And of course, botanicals, leaves, and wood typically have an abundance of these humic substances, right? They are useful for more than just an interesting and unique aesthetic effect! There is a lot of room for research about influencing the overall environment in our aquariums here! I think we've barely scratched the surface of the potential for utilizing botanicals in our aquariums.

This is another one of those foundational aspects of the natural style of aquarium that we espouse. The understanding that processes like decomposition and physical transformation of the materials that we utilize our tanks are normal, expected, and beautiful things requires us to make mental shifts.

Botanical materials don't have nearly as much impact on the water parameters (other than say, conductivity and dissolved oxygen) as the soils do. These waters have high concentrations of humic and fulvic acids derived from sandy "hydromorphic podsols" prevalent in the region.  However, these allochthonous materials have huge impact on the ecology of these systems!

Leaf litter, as one might suspect, is of huge importance in these ecosystems. Especially in smaller tributaries. In one study which I came across, it was concluded that, "The smaller the stream, the more dependent the biota is on leaf litter habitats and allocthonous energy derived directly or indirectly from the forest." (Kemenes and Forsberg)

From the same study, it was concluded that the substrate of the aquatic habitat had significant influence on the feeding habits of the fishes which resided in them: 

"The biomass of allocthonous insectivore increased in channels with a higher percentage of sandy bottom substrate. Detritivorous insectivore biomass, in contrast, increased significantly in channels with a higher percentage of leaf substrate. General insectivores tended to increase in streams with higher proportions of leafy substrate, too.

Whats the implication for us as hobbyists? Well, for one thing, we can set up the benthic environment in our tanks to represent the appropriate environment for the fishes which we want to keep in them. Simple as that!

t's as much about function as anything else. And, about pushing into some new directions. The unorthodox aesthetics of these unusual aquariums we play with just happen to be an interesting "by-product" of theirfunction.

I personally think that almost every botanical-style aquarium can benefit from the presence of leaves. As we've discussed numerous times, leaves are the "operating system" of many natural habitats (ecology-wise), and perform a similar role in the aquarium.

The presence of botanical materials such as leaves in these aquatic habitats is fundamental. Leaves and other botanicals are extremely pervasive in almost every type of aquatic habitat.

In the tropical species of trees, the leaf drop is important to the surrounding environment. The nutrients are typically bound up in the leaves, so a regular release of leaves by the trees helps replenish the minerals and nutrients which are typically depleted from eons of leaching into the surrounding forests.

Now, interestingly enough, most tropical forest trees are classified as "evergreens", and don't have a specific seasonal leaf drop like the "deciduous" trees than many of us are more familiar with do...Rather, they replace their leaves gradually throughout the year as the leaves age and subsequently fall off the trees.

The implication here?

There is a more-or-less continuous "supply" of leaves falling off into the jungles and waterways in these habitats, which is why you'll see leaves at varying stages of decomposition in tropical streams. It's also why leaf litter banks may be almost "permanent" structures within some of these bodies of water!

Our botanical-style aquariums are not "set-and-forget" systems, and require basic maintenance (water exchanges, regular water testing, filter media replacement/cleaning), like any other aquarium.  They do have one unique "requirement" as part of their ongoing maintenance which other types of aquariums seem to nothave: The "topping off" of botanicals as they break down.

The "topping off" of botanicals in your tank accomplishes a number of things: first, it creates a certain degree of environmental continuity- keeping things consistent from a "botanical capacity" standpoint. Over time, you have the opportunity to establish a "baseline" of water parameters, knowing how many of what to add to keep things more-or-less consistent, which could make the regular "topping off" of botanicals a bit more of a "science" in addition to an "art."

In addition, it keeps a consistent aesthetic "vibe" in your aquarium. Consistent, in that you can keep the sort of "look" you have, while making subtle- or even less-than-subtle "enhancements" as desired. 

Yeah, dynamic.

And, of course, "topping off" botanicals helps keeps you more intimately "in touch" with your aquarium, much in the same way a planted tank enthusiast would by trimming plants, or a reefer while making frags. When you're actively involved in the "operation" of your aquarium, you simply notice more. You can also learn more; appreciate the subtle, yet obvious changes which arise on an almost daily basis in our botanical-style aquariums.

I dare say that one of the things I enjoy doing most with my blackwater, botanical-style aquariums (besides just observing them, of course) is to "top off" the botanical supply from time to time. I feel that it not only gives me a sense of "actively participating" in the aquarium- it provides a sense that you're doing something nature has done for eons; something very "primal" and essential. Even the prep process is engaging.

Think about the materials which accumulate in natural aquatic habitats, and how they actually end up in them, and it makes you think about this in a very different context. A more "holistic" context that can make your experience that much more rewarding. Botanicals should be viewed as "consumables" in our hobby- much like activated carbon, filter pads, etc.- they simply don't last indefinitely.

Many seed pods and similar botanicals contain a substance known as lignin. Lignin is defined as a group of organic polymers which are essentially the structural materials which support the tissues of vascular plants. They are common in bark, wood, and yeah- seed pods, providing protection from rotting and structural rigidity.

In other words, they make seed pods kinda tough.

Yet, not permanent.

That being said, they are typically broken down by fungi and bacteria in aquatic environments. Inputs of terrestrial materials like leaf litter and seed pods into aquatic habitats can leach dissolved organic carbon (DOC), rich in lignin and cellulose. Factors like light intensity, mineral hardness, and the composition of the aforementioned bacterial /fungal community all affect the degree to which this material is broken down into its constituent parts in this environment.

Hmm...something we've kind of known for a while, right?

So, lignin is a major component of the "stuff" that's leached into our aquatic environments, along with that other big "player"- tannin.

Tannins, according to chemists, are a group of "astringent biomolecules" that bind to and precipitate proteins and other organic compounds. They're in almost every plant around, and are thought to play a role in protecting the plants from predation and potentially aid in their growth. As you might imagine, they are super-abundant in...leaves. In fact, it's thought that tannins comprise as much as 50% of the dry weight of leaves!


And of course, tannins in leaves, wood, soils, and plant materials tend to be highly water soluble, creating our beloved blackwater as they decompose. As the tannins leach into the water, they create that transparent, yet darkly-stained water we love so much!  

In simplified terms, blackwater tends to occur when the rate of "carbon fixation" (photosynthesis) and its partial decay to soluble organic acids exceeds its rate of complete decay to carbon dioxide (oxidation).

Chew on that for a bit...Try to really wrap your head around it...

And sometimes, the research you do on these topics can unlock some interesting tangential information which can be applied to our work in aquairums...

Interesting tidbit of information from science: For those of you weirdos who like using wood, leaves and such in your aquariums, but hate the brown water (yeah, there are a few of you)- you can add baking soda to the water that you soak your wood and such in to accelerate the leaching process, as more alkaline solutions tend to draw out tannic acid from wood than pH neutral or acidic water does. Or you can simply keep using your 8.4 pH tap water! 

"ARMCHAIR SPECULATION": This might be a good answer to why some people can't get the super dark tint they want for the long term...If you have more alkaline water, those tannins are more quickly pulled out. So you might get an initial burst, but the color won't last all that long...

I think just having a bit more than a superficial understanding of the way botanicals and other materials interact with the aquatic environment, and how we can embrace and replicate these systems in our own aquariums is really important to the hobby. The real message here is to not be afraid of learning about seemingly complex chemical and biological nuances of blackwater systems, and to apply some of this knowledge to our aquatic practice.

It can seem a bit  intimidating at first, perhaps even a bit contrarian to "conventional aquarium practice", but if you force yourself beyond just the basic hobby-oriented material out there on these topics (hint once again: There aren't many!), there is literally a whole world of stuff you can learn about!

It starts by simply looking at Nature as an overall inspiration...

Wondering why the aquatic habitats we're looking at appear the way they do, and what processes create them. And rather than editing out the "undesirable" (by mainstream aquarium hobby standards) elements, we embrace as many of the elements as possible, try to figure out what benefits they bring, and how we can recreate them functionally in our closed aquarium systems.

There are no "flaws" in Nature's work, because Nature doesn't seek to satisfy observers. It seeks to evolve and change and grow. It looks the way it does because it's the sum total of the processes which occur to foster life and evolution.

We as hobbyists need to evolve and change and grow, ourselves.

We need to let go of our long-held beliefs about what truly is considered "beautiful." We need to study and understand the elegant way Nature does things- and just why natural aquatic habitats look the way they do.  To look at things in context.  To understand what kinds of outside influences, pressures, and threats these habitats face.

And, when we attempt replicate these functions in our aquariums, we're helping to grow this unique segment of the aquarium hobby.

Please make that effort to continue to educate yourself and get really smart about this stuff...And share what you learn on your journey- all of it- the good and the occasional bad. It helps grow the hobby, foster a viable movement, and helps your fellow hobbyists!

Stay studious. Stay thoughtful. Stay inquisitive. Stay creative. Stay engaged...

And Stay Wet.


Scott Fellman

Tannin Aquatics 


Keeping it together: The beauty of "buttress roots" and their function in the flooded forests...

There is something incredibly compelling about the way terrestrial trees and shrubs interact with the aquatic environment. This is a surprisingly dynamic, highly inter-dependent relationship which has rarely been discussed in aquarium circles.

Let's have that talk!

We have talked a lot about roots before...They are structures which are so important in so many ways to these ecosystems, in both their terrestrial and aquatic phases.

Not only do they help "secure the soils" from falling away, they foster epiphytic algae, fungal growth, and biofilms, which supplement the foods of the resident fishes. And of course, they provide a physical habitat for fishes to forage, seek shelter, and reproduce among. In short, these roots create a unique "microhabitat" which harbors a diversity of life.

And they look pretty aesthetically cool, too!

So yeah- this makes them an irresistible subject for a natural-looking- and functioning- aquascape!. And relatively easy to execute, too!

With a variety of interesting natural materials readily available to us as hobbyists, it's easier than ever to recreate these habitats in as detailed a version as you care to do. 

As usual with my ramblings, this blog has become yet another homage to roots and other forest features, and how they function in the transitional aquatic habitats we love so much.

One of the foundational root types that we can replicate in or aquarium works what botanists call "buttress roots." Not only are these interesting structures to replicate in our aquariums, they are an important component of the ecosystems which make up the flooded forests, particularly in areas like Amazonia.

Buttress roots are large, very wide roots that help keep shallow-rooted forest trees from toppling over. They are commonly associated with nutrient-poor soils (you know, like the kinds you see in the igapo or varzea ecosytems). These roots also serve to take uptake nutrients are available in these podzolic soils.

The buttress roots of various species of forest trees often weave in and out of each other horizontally, and create a vast network which serves to keep many trees in the forest from toppling over. And since these habitats often flood during the rainy season, buttress roots help stabilize the trees and retain soils during this inundation.

Isn't that interesting? Even the trees have made adaptations over eons which allow them to survive under these harsh conditions! As you might suspect, the "white-water" flooded forests (Varzea) tend to be richer in species diversity and density than the less nutrient-dense blackwater-flooded Igapo forests. Seems like everything in these ecosystems is a function of nutrient availability, isn't it?

And the sandy soil which comprises these habitats is low in nutrients, such as phosphorus, potassium, calcium, and magnesium. Ecologists will tell you that the soil also has a "high infection rate", or density, of fungi, and consists of a lot of fine roots in the upper layer of the soil.

The network of fine roots helps these forests uptake nutrients in these nutrient- poor conditions. And even more interesting, studies have shown that decomposition of materials can take several years in the deep litter layer on the forest floor.

In addition to being nutrient poor, the sandy soil does not retain water very well, which can lead to drought after the inundation period is over. It's another example of the intricate relationship between land and water, and the way terrestrial and aquatic habitats work together. 

Because the flood pulses are so predictable, eons of this process has led to adaptations by various forest trees to withstand them, as well as to depend upon various species of fishes ('frugivores") to help disperse seeds throughout the forest by consuming and pooping them out!

Ecologists have further determined that the distribution of various species of trees in these forests may be largely determined by the ability of their seedlings to tolerate periods of submergence and limited light that penetrates the canopy through the water column.

(Cariniana legalis tree. Image by mauroguanandi, used under CC BY 2.0)

In fact, in remarkable adaptation to this environment, seedlings may be completely submerged for several months, and many species can tolerate several weeks of complete submergence in a state of "rest." Most species  in these forests tend to grow during the times year when the forests are flooded, and tend to bear fruit and flower when the waters start to recede.

It's all about adaptation to this incredible, highly variable habitat. 

We talk a lot about food webs in these habitats and how to replicate some of their attributes in our aquariums. Here's another insight into the food webs of these flooded forest habitats to consider, from a paper I found by researcher Mauricio Camargo Zorro:

"Both algae and aquatic macrophytes enter in aquatic food webs mostly in form of detritus (fine and coarse particulate organic matter) or being transported by water flow and settling onto substrates (Winemiller 2004). Particulate organic matter in the stream of rapids and waterfalls is mostly associated with biofilm and epilithic diatoms that grow on rocks, submerged wood, and herbaceous plants and compose the main energy sources for macro invertebrates and other trophic links (Camargo 2009a)."

A lot there, I know. What this does is give us some ideas about facilitating the "in situ" production of supplementary food sources in our aquariums. 

This was what inspired me in a recent home "planted" blackwater aquarium. The interaction between the terrestrial elements and the aquatic ones. Allowing terrestrial leaves to accumulate naturally among the "tree root structure" we have created fosters this more natural-functioning environment.

As these leaves begin to soften and ultimately break down, they foster microbial growth, biofilms, and fungal growths- all of which will provide supplemental foods for the resident fishes...just like what happens in Nature. 

Facilitating these processes- allowing the materials to accumulate naturally and break down "in situ" is a key component of replicating and supporting these microhabitats in our aquariums. The typical aquarium hardscape- artistic and beautiful as it might be, generally replicates the most superficial aesthetic aspects of such habitats, and tends to overlook their function- and the reasons why such habitats form.

Replicating forest structures- like buttress roots and their functions- really helps facilitate more natural biological processes, functions, and behaviors in our fishes! 

The possibilities are endless here! And, as always, the aesthetics are a "collateral benefit" of the process.

And of course, I think it's a call for us to employ some bigger, thicker pieces of wood in our tanks! Now, sure, I can hear some groans. I mean, big, heavy wood has some disadvantages in an aquarium. First, the damn things are...well- BIG- taking up a lot of physical space, and in our case, precious water volume. And the "scale" is a bit different. And, of course, a big, heavy piece of wood is kind of pricy. And physically cumbersome for some.

However, the use of larger pieces of wood- or several pieces of wood aggregated together- can create really interesting structures which can replicate the form and function of buttress roots in the aquarium. 


At the very least, you can try a fairly large piece of aquatic wood (or several smaller pieces, aggregated to form one large piece) some time. I think you might find this sort of arrangement quite fascinating to play with!

Arrange the wood in such a way as to break up the tank space and give the impression that it simply rooted naturally. Let it create barriers for fishes to swim into, and disrupt water flow patterns. Allow it to "cultivate" fungal growth and biofilms on its surfaces, and small pockets where leaves, botanicals, substrate materials, and...detritus can collect.

This is exactly what happens in Nature.

It's fascinating and important for us to understand- at least on a superficial level- the concept of replicating some of the structures and features of these transitional habitats, such as flooded forest floors.

By understanding how these structures work, why the exist, and how they provide a benefit to the organisms which live among them, we will be in an excellent position to incorporate exciting features- such as buttress roots-into our future aquariums!

Stay inspired. Stay educated. Stay bold. Stay creative. Stay thoughtful...

And Stay Wet.


Scott Fellman

Tannin Aquatics