Trees of life...literally.

Just about everything that we play with in the botanical-style aquarium world- leaves, seed pods, bark, stems- has its origin in...trees. And trees, of course, yield wood. Trees are perhaps one of the most important influences on the dynamic tropical habitats we are fascinated by- perhaps second only to soils.

Virtually every time we plan an aquascape, it seems like one of the most major components of the composition is wood. It's been that way in the hobby for years. And it makes sense. Wood adds a sense of color, texture, and depth to any aquascape.

It makes or breaks it, in many cases, right? Wood comes from- trees, when I last checked. ūüėÜ

In the botanical-style aquarium world, wood reigns supreme over rock, because many of the habitats we replicate in our tanks tend to have more wood than rocks.

And of course, branches and twigs and other tree parts are ubiquitous in the wild aquatic environments of the world.  And many of you are absolutely incredible at 'scaping with wood! Collectively, we've developed extreme talent for creating fantastic designs with all sorts of wood, roots, and twigs.

However, there is more to this stuff than just the good looks, right?

Of course! There is a functional benefit that is as beautiful- if not more so- than the aesthetics themselves. 

Let's focus for a bit on the ecological "role" that tree branches, trunks, and other components of the trees play in the wild aquatic ecosystems of the world. Doing this helps give us not only "context" as to how they function, but what impact they have on the overall aquatic habitat. This is an extremely helpful context when we decide to play with wood in our aquariums!

In Nature, it is not uncommon at all for small (and large) trees to fall in the rain forest, with punishing rain and saturated ground conspiring to easily knock over anything that's not firmly rooted!

When these trees fall over, they often fall into small streams, or in the case of the varzea or igapo environments in The Amazon ( the ones that I'm totally obsessed with), they fall and are ultimately submerged in the inundated forest floor when the waters return.

And of course, they immediately impact their (now) aquatic environment, fulfilling several functions.

Fallen trees provide a physical barrier or separation from currents, perhaps creating a little "dam", which accumulates leaves, sediments, and detritus- all important as food sources to a huge number of aquatic organisms. They also provide a "substrate" for algae and biofilms to multiply on, and providing places for fishes forage among, and hide in. Many fishes, like small cichlids, will reproduce and raise their fry among these fallen tree trunks.

An entire community of aquatic life forms uses the fallen tree for many purposes. And the tree trunks, branches, and other parts of the tree will last for many years, fulfilling this important role in the aquatic ecosystems they now reside in each time the waters return.

Let's focus on this "ecological component" for just a bit. Let's review what happens when a tree falls...literally!

Shortly after falling into the water, fungi and other microorganisms act to colonize the surfaces, and biofilms populate the bark and exposed surfaces of the tree.  Over time, the tree will impart many chemical substances, (lignin, humic acids, tannins, sugars, etc.) into the water as the bark breaks down and the tree itself softens.

In aquatic ecosystems, much of the initial breakdown of botanical materials is conducted by detritivores- specifically, fishes, aquatic insects and invertebrates, which serve to begin the process by feeding upon the tissues of the seed pod or leaf, while other species utilize the "waste products" which are produced during this process for their nutrition.

In these habitats, such as streams and flooded forests, a variety of species work in tandem with each other, with various organisms carrying out different stages of the decomposition process.

The fallen tree literally brings new life to the waters.

I can't stress enough how interesting and important this transformation of the terrestrial environment to the aquatic one is. It helps explain so much of why the aquatic habitats look and function the way they do, and how they impact the life forms which make use of them.

The materials that comprise the tree are known in ecology as "allochthonous material"-  something imported into an ecosystem from outside of it.  (extra points if you can pronounce the word on the first try!)  We've talked about that stuff for a while now, right?


And of course, in the case of fallen trees, this includes includes leaves, fruits and seed pods that fall, or are washed into the water along with the branches and trunks that topple into the stream.  

There are stages of breakdown of botanical materials in water which ecologists have identified. Each one of these phases actually plays out in our aquariums, as well- just another cool advantage of working with natural materials!

After it's submerged, some of the "solutes" (substances which dissolve in liquids- in this instance, sugars, carbohydrates, tannins, etc.) in the tree/leaf /seed pod tissues are released rather quickly. Interestingly, this "leaching stage" is known by science to be more of an artifact of lab work (or, in our case, aquarium work!) which utilizes dried leaves, as opposed to fresh ones.

The second stage of the process is called the "conditioning phase", in which microbial colonization on the branch, leaf or seed pod takes place. They begin to consume some of the tissues of the leaf- at least, softening it up a bit and making it more palatable for the aforementioned detritivores.

The last phase, "fragmentation", is exactly what it sounds like- the physical breakdown of the submerged material by various organisms, ranging from small crustaceans and shrimp to fungi- and even fishes, collectively known as "shredders." It has been suggested by some ecologists that microbes might be more important than "shredders" in tropical streams. These are typically more pronounced processes in softer materials like leaves, as opposed to more durable ones like tree trunks and branches.

Fauna composition differs between habitats, yet most studies I've found will tell you that Chironomidae ( insect larvae-think Bloodworms!) are the most abundant in many streams, pools, flooded forests, and "riffles" in the initial period of leaf and botanical material breakdown! 

The botanical material is broken down into various products utilized by a variety of life forms. The particles are then distributed downstream by the current and are available for consumption by a variety of organisms which comprise aquatic food webs.

Six primary breakdown products are considered in the decomposition process: bacterial, fungal and shredder biomass; dissolved organic matter; fine-particulate organic matter; and inorganic mineralization products such as CO2, NH4+ and PO43-.  In tropical streams, a high decomposition rate has been related to high fungal activity...they accomplish a LOT!

Interestingly, scientists have noted that the leaves of many tropical plant species tend to have higher concentrations of secondary compounds and more recalcitrant compounds than do leaves of temperate species. Also, some researchers hypothesized that high concentrations of secondary compounds ( like tannins) in many tropical species inhibit leaf breakdown rates in tropical streams...that may be why you see leaf litter beds that last for many years and become known features in streams and river tributaries! 

These materials are known to ecologists as ‚Äúcoarse particulate organic matter‚ÄĚ (CPOM), and in the waters of these¬†inundated forest floors there is a lot of CPOM, and the community of aquatic organisms (typically the aforementioned aquatic insects and crustaceans) has a high proportion of ‚Äúshredders‚ÄĚ, which feed on the CPOM and break it up into tinier bits called (wait for it...) "fine particulate organic matter" (FPOM).

And of course, some fishes, like larger characins, catfishes, etc., consume fallen fruits and seeds as part of their diet as well, aiding in the "refinement" of the CPOM, as well as helping spread the undigested seeds throughout the forest floor, ready to sprout when the waters recede.

Other organisms make use of the fine particulate matter by filtering it from the water or accessing it in the sediments that result. These allochthonous materials support a diverse food chain that's almost entirely based on our old friend, detritus!

Yeah, that detritus.

The stuff of nightmares for many dyed-in-the-wool hobbyists...The stuff of dreams for many hungry fishes who consume it and the associated fauna within it! It's so incredibly important to aquatic organisms that I can't even begin to stress it enough!

And, although the forest floor receives substantially less sunlight than open rivers, the nutrients and available light are utilized by algae, which may colonize the surfaces facing up into the sun. And of course, many fishes make use of these algal films as a food source...Sensing a theme here?


So, to summarize at this point:

Fallen, submerged trees and their constituent structures (branches, seed pods, LEAVES) are of enormous importance as a provider, facilitator, and accumulator of food for aquatic organisms.

We see similar results in our aquariums, right? "Undefended" surfaces are colonized by algal "patinas" and biofilm/fungal growths. These growths may look a bit "unconventional" to many hobbyists, but their appearance belies their elegance and beauty as indispensable components of a complex aquatic ecosystem.

And of course, the tree, like almost anything that is submerged, will gradually decompose over long periods of time. This process is actively exploited by aquatic life forms at all levels. Hollowed-out sections will be inhabited by fishes and exploited for the shelter they offer, and of course, the aforementioned crustaceans and insects will utilize the tree and its constituent materials in various ways.

And, as for the fish population, it's long been known by ecologists that fish movement, species richness, diversity, and population density are directly affected by the physical and biological influences of... fallen trees!

And the deep beds of leaves that may be "corralled" by the fallen trees- a sort of natural "dam"- play an important tole in determining what fishes live in these "microhabitats." Deep accumulations of leaves, as we've discussed before, will definitely limit some fish species, which cannot tolerate the lower oxygen concentrations found in these areas, yet attract others which make use of the life forms living on the surface layers of the leaves.

Other fishes take advantage of the "physical barrier" that a fallen tree presents to shelter from predatory species. Many adaptations have taken place over eons to allow fishes to exploit these changes to their environment caused by fallen trees!

It's pretty fascinating stuff, all of which has implications for us as aquarists who want to replicate natural habitats to the most realistic degree possible. As aquarium hobbyists, what does this all mean to us? How can we employ the lessons learned from fallen trees in Nature? What can we do to mimic this?

Well, for one thing, I think it's a call for us to consider employing some bigger, thicker pieces of wood in our tanks!

Now, sure, I can hear some groans.

I mean, big, heavy wood has some disadvantages in an aquarium. First, the damn things are...well- BIG- taking up a lot of physical space, and in our case, precious water volume.  And they're likely not as sexy as those awful "bonsai trees"mounted to rocks that are (regrettably) becoming popular again...

And, of course, a big, heavy piece of wood is kind of...pricy. And your truly hates shipping them!

Although wild habitats are filled with big old tree trunks, stumps, and branches, scenes just begging to be recreated in aquariums, we tend to hesitate...

There are many 'scapers who would make the case that you can't make big, gnarly pieces of wood "work" in an aquarium because of their impact on "ratio" and "proportion", etc... You know, the "artistic" part.

And to these types, I gently admonish you to check out the works of some talented 'scapers, like our friend, Mitch Mazur, who have made that now-famous "mental shift" to work with Nature in an artistic interpretation...

These pleas and "look what HE did!" sort of arguments are almost a "prerequisite" of late when I talk about any idea that has an "aesthetic" component to it, because the self-appointed "guardians of aquascaping style" seem to come out of the woodwork (lol) after these discussions, reciting dozens of well-rehearsed reasons why the concept won't work, rather than even trying to do something similar. 

It's weird. 

To that, of course, I call, "Bullshit!"


Yeah, a big piece of wood or dense aggregation of smaller pieces in an aquarium does create some challenges, but most of them are in our head. Hell, Takashi Amano himself did a few amazing tanks with huge pieces of wood years ago. Remember?

And of course, when we utilize a large piece of wood (relative to the aquarium's water volume), it has a chemical and physical impact on the aquatic environment that is...hey- sort of similar to that which occurs in Nature, right?


Now, on a purely practical level, let's think about the very practices we employ when utilizing wood in our aquariums. It starts with the preparation process...

When you first submerge wood, a lot of the dirt from the atmosphere and surrounding environment comes off, along with tannins, lignin, and all sorts of other "stuff" from the exterior surfaces and all of those nooks and crannies that we love so much.

And of course, there are the tannins. Now, I don't know about you, but I'm always sadistically amused by the frantic posts on aquascaping forums from hobbyists that their water is turning brown after adding a piece of driftwood. I mean- what's the big deal?

Oh, yeah, not everyone likes it...I forgot.

The reality, as you probably have surmised, is that driftwood will continue to leach tannins pretty much for as long as it's submerged. As a "tinter", I see this as a great advantage in helping establish and maintain the blackwater look, and to impart the humic substances that have been proven to be very beneficial to the health of almost all freshwater fishes.

It's a unique aesthetic, too, of course!

When it comes to preparation, I'm more concerned with those impurities- the trapped dirt and such contained within the wood.

As you probably know, that's also why I've been a staunch advocate of the overly conservative "boil and soak" approach to the preparation of botanicals, too. A lot of material gets bound up in the dermal layer of the tree where the wood comes from. The bulk of the dry mass of the xylem (the "network" within the tree which transports water and soluble mineral nutrients from the roots throughout the plant, and comprises what we know as "wood.") is cellulose, a polysaccharide, and most of the remainder is lignin, which is a sort of complex polymer. 

Why the mini botany lesson?

Well, because when you have some idea of what you're putting into your tank, you'll better understand why it behaves the way it does when submerged! In a given piece of driftwood, there is going to be some material bound up in these structures, and it will be released (gradually or otherwise) into the water that surrounds it, with a big "burst" happening on initial submersion. 

This is why, during the first couple of weeks after you submerge wood, that the water often becomes dark and even cloudy. There is a lot of "stuff" in there!

It's far better, in my opinion, to take the time to start the "curing" process in a separate container apart from the display aquarium. This is not rocket science, nor some wisdom only the enlightened aquarists attain. It's common sense, and a practice we all need to simply view as necessary with terrestrial materials like wood and botanicals. You may love the tannins as much as I do, but trust me, your tank could do without the polyscaccharides and other impurities from the outer layers of the wood.

The potential affects on water quality are significant!

Here is a natural corollary: It's pretty plain to see that at least part of the reason we see a burst of new algae growth and biofilm in wood recently added to an aquarium is that there is so much stuff bound up in it. Algal and fungal sports can literally "bloom" during the initial period after submersion. It's exactly what happens in the wild aquatic habitats of the world when tree trunks and branches are covered by water.

On the other hand, the adventurous aquarist in me can't help but wonder if we should just give the wood a thorough washing, and let this whole process play out in the aquarium, to foster this amazing biodiversity within the aquarium itself. Again, this is an example of setting up an aquarium from the start to replicate both the form and function of Nature.

Yes, it will look different. Yeah, you'll see a lot more biofilm, fungal growth, detritus, and perhaps even slightly hazy water. You'll have to carefully monitor the nitrogen cycle, and manage nutrient accumulations with good husbandry...

Yet, think of the interesting results of this incredible patience! 

At the very least, try a fairly large piece of aquatic wood (or several smaller pieces, aggregated to form one large piece) some time. I think you might find this sort of arrangement quite fascinating to play with regardless of if you "prep" it in the display, or in a separate container first.

Arrange the wood in such a way as to break up the tank space and give the impression that it simply fell in naturally. Let it create barriers for fishes to swim into, and disrupt water flow patterns. Allow it to "cultivate" fungal growth and biofilms on its surfaces, and small pockets where leaves, botanicals, substrate materials, and...detritus can collect.

"Pre-populate" the system with food orgmaisms, like Daphnia, Gammarus, and the like, weeks or months before you add the fishes. Enjoy the biofilms. And select a population of fishes that can exploit the variety of new habitats that the "fallen tree" creates.

There are many distinct "zones" created by these sorts of aggregations of tree trunks and branches...This is absolutely a perfect utilization for wood. Looking at these materials from a functional perspective- observing the roles the serve and how they aggregate in Nature- then interpreting it for aquariums-is the way to go, IMHO.

So, yeah.

Trying what might appear to be a big, somewhat awkward piece of wood, or group of wood  pieces- filling much of the tank can be a challenge to our aesthetic sensibilities at first.

But guess what?

You'll get over it when you simply enjoy the setup for what it represents- not for a "typical" aquascape. And, when you populate the tank "correctly", with fishes that can utilize the interesting ecological "niches" within the tank, you'll realize that "conventional" aquascaping is not the only way...

Yes, hobbyists have been throwing big old wood pieces into tanks for decades...

However, I don't think that we've played it out in a manner that was specifically intended to replicate the "functional" aspect of them.

That is, we haven't really thought through the idea of that big, gnarly tree trunk in our tank functions not only as an aesthetic component, but more important- as an ecosystem, which supports not only an abundance of life, but provides a tremendously interesting study in adaptation and the resourcefulness of nature.

Perhaps these aggregations are a freshwater "version" of a coral reef- filled with multiple ecological niches and functions.

Oh, and they look cool, too.

Yeah, this piece covered a fair amount of territory today. And I think that it's good to look at multiple aspects of what seems like a straightforward topic- because we as aquarists need to think beyond just the idea of utilizing wood in our aquariums. We need to think of wood as a literal "bringer of life" in both the natural habitats and in the aquarium...

It's another "mental shift" we can make. A pretty easy one, actually! 

Make it. Go for it.

So, a tree may fall in the forest..And an entire ecosystem will arise as a result. Yeah, an awful lot of good stuff starts happening underneath the water!

This is a really important thing for us to grasp.

Literally, trees are bringers of life- above snd beneath the waters of the world.

Stay thoughtful. Stay curious. Stay observant. Stay patient. Stay inspired. Stay creative...

And Stay Wet.


Scott Fellman

Tannin Aquatics 


Scott Fellman
Scott Fellman


Leave a comment